caufieldjh/awesome-bioie
A curated list of open-source resources for doing Biomedical Information Extraction using NLP and LLMs.

Not currently ranked — collecting fresh signals.
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This awesome list aggregates resources relevant to extracting structured information from unstructured biomedical text. It covers methods, tools, datasets, and tutorials in the BioNLP/BioIE space, with particular attention to recent advances from language models like BERT and large language models (GPT-4, LLaMA, Gemini). Resources are preferentially open-access and publicly available.
Frequently asked
- What is caufieldjh/awesome-bioie?
- A curated list of open-source resources for doing Biomedical Information Extraction using NLP and LLMs.
- Is awesome-bioie open source?
- Yes — caufieldjh/awesome-bioie is open source, released under the CC0-1.0 license.
- How popular is awesome-bioie?
- caufieldjh/awesome-bioie has 454 stars on GitHub.
- Where can I find awesome-bioie?
- caufieldjh/awesome-bioie is on GitHub at https://github.com/caufieldjh/awesome-bioie.