Molecular dynamics that actually fits on a GPU
GPUMD runs atomistic simulations entirely on GPUs, with a homegrown machine-learned potential called NEP that keeps getting better.

What it does
GPUMD is a molecular dynamics package written in CUDA that lives entirely on the GPU. It simulates how atoms move and interact, and it can train and run a flavor of machine-learned interatomic potentials called neuroevolution potentials (NEPs). The package produces two binaries: gpumd for MD simulations and nep for training potentials. It needs compute capability 3.5+ and CUDA 9.0 or newer, and builds with a single make in the src directory.
The interesting bit
The NEP potential family has evolved through four major versions in about four years (NEP1 through NEP4/UNEP-v1), with spinoffs for tensorial properties, dynamic charges, coarse-graining, and even path-integral quantum simulations. The project maintains a separate CPU implementation of NEP for LAMMPS integration, which suggests the authors care about ecosystem adoption, not just benchmark numbers.
Key highlights
- GPU-native from the ground up, not a port of a CPU codebase
- Built-in training and inference for NEP machine-learned potentials
- Extensive published methodology: heat transport decomposition, shock wave simulation, hybrid Monte Carlo/MD, linear-scaling quantum transport
- Active ecosystem: Colab tutorial, dedicated tutorials repo, PySAGES integration for enhanced sampling
- Cross-platform: Linux/GCC and Windows/MSVC
Caveats
- Requires NVIDIA hardware; no AMD or CPU fallback mentioned for the main package
- README is heavy on citation table, light on architectural or performance details
- The
makebuild is simple but also means no CMake or package manager integration
Verdict
Materials scientists and computational physicists who need large-scale atomistic simulations with machine-learned potentials should look here. If your work is small-scale, CPU-bound, or needs broad hardware portability, this is not your tool.