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bowang-lab/scGPT

A foundation model applying GPT-style transformer architecture to single-cell multi-omics data for cell embedding and biological analysis.

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scGPT is a foundation model for single-cell multi-omics built using generative AI techniques. It applies transformer-based architectures similar to GPT to biological single-cell data, enabling tasks such as cell embedding, zero-shot integration, and continual pretraining. The model comes with pretrained checkpoints and integrates with HuggingFace for model loading across PyTorch CPU, GPU, and flash-attention backends.

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